{ "_id": "6a1d34471d7bb097a0a3c681", "Package": "serosv", "Type": "Package", "Title": "Model Infectious Disease Parameters from Serosurveys", "Version": "1.2.0.9000", "Authors@R": "c(\nperson(\"Anh\", \"Phan Truong Quynh\", email = \"anhptq@oucru.org\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0000-2129-435X\")),\nperson(\"Nguyen\", \"Pham Nguyen The\", email = \"nguyenpnt@oucru.org\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-0356-2776\")),\nperson(\"Long\", \"Bui Thanh\", role = \"aut\"),\nperson(\"Tuyen\", \"Huynh\", email = \"tuyenhn@oucru.org\", role = \"aut\"),\nperson(\"Thinh\", \"Ong\", email = \"thinhop@oucru.org\", role = \"aut\", comment = c(ORCID = \"0000-0001-6772-9291\")),\nperson(\"Marc\", \"Choisy\", email = \"mchoisy@oucru.org\", role = \"aut\", comment = c(ORCID = \"0000-0002-5187-6390\"))\n)", "Description": "An easy-to-use and efficient tool to estimate infectious\ndiseases parameters using serological data. Implemented models\ninclude SIR models (basic_sir_model(), static_sir_model(),\nmseir_model(), sir_subpops_model()), parametric models\n(polynomial_model(), fp_model()), nonparametric models\n(lp_model()), semiparametric models\n(penalized_splines_model()), hierarchical models\n(hierarchical_bayesian_model()). The package is based on the\nbook \"Modeling Infectious Disease Parameters Based on\nSerological and Social Contact Data: A Modern Statistical\nPerspective\" (Hens, Niel & Shkedy, Ziv & Aerts, Marc & Faes,\nChristel & Damme, Pierre & Beutels, Philippe., 2013)\n.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "Collate": "'data.R' 'fractional_polynomial_models.R'\n'polynomial_models.R' 'utils.R' 'compare_models.R'\n'correct_prevalence.R' 'weibull_model.R' 'farrington_model.R'\n'nonparametric.R' 'semiparametric_models.R' 'mixture_model.R'\n'hierarchical_bayesian_model.R' 'to_titer.R' 'serosv.R'\n'stanmodels.R' 'plots.R' 'compute_ci.R' 'age_time_model.R'\n'predict.R' 'print.R'", "Config/testthat/edition": "3", "URL": "https://oucru-modelling.github.io/serosv/,\nhttps://github.com/OUCRU-Modelling/serosv", "VignetteBuilder": "knitr", "Biarch": "true", "SystemRequirements": "GNU make", "BugReports": 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"hierarchical_bayesian_model" ] }, { "page": "lp_model", "title": "A local polynomial model.", "topics": [ "lp_model" ] }, { "page": "mixture_model", "title": "Fit a mixture model to classify serostatus", "topics": [ "mixture_model" ] }, { "page": "mumps_uk_1986_1987", "title": "Mumps serological data from the UK in 1986 and 1987 (aggregated)", "topics": [ "mumps_uk_1986_1987" ] }, { "page": "parvob19_be_2001_2003", "title": "Parvo B19 serological data from Belgium from 2001-2003 (line listing)", "topics": [ "parvob19_be_2001_2003" ] }, { "page": "parvob19_ew_1996", "title": "Parvo B19 serological data from England and Wales in 1996 (line listing)", "topics": [ "parvob19_ew_1996" ] }, { "page": "parvob19_fi_1997_1998", "title": "Parvo B19 serological data from Finland from 1997-1998 (line listing)", "topics": [ "parvob19_fi_1997_1998" ] }, { "page": "parvob19_it_2003_2004", "title": "Parvo B19 serological data from Italy from 2003-2004 (line listing)", "topics": [ 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