Package: serosv
Type: Package
Title: Model Infectious Disease Parameters from Serosurveys
Version: 1.2.0.9000
Authors@R: c(
    person("Anh", "Phan Truong Quynh", email = "anhptq@oucru.org", role = c("aut", "cre"), comment = c(ORCID = "0009-0000-2129-435X")),
    person("Nguyen", "Pham Nguyen The", email = "nguyenpnt@oucru.org", role = c("aut"), comment = c(ORCID = "0000-0002-0356-2776")),
    person("Long", "Bui Thanh", role = "aut"),
    person("Tuyen", "Huynh", email = "tuyenhn@oucru.org", role = "aut"),
    person("Thinh", "Ong", email = "thinhop@oucru.org", role = "aut", comment = c(ORCID = "0000-0001-6772-9291")),
    person("Marc", "Choisy", email = "mchoisy@oucru.org", role = "aut", comment = c(ORCID = "0000-0002-5187-6390"))
  )
Description: An easy-to-use and efficient tool to estimate infectious
        diseases parameters using serological data. Implemented models
        include SIR models (basic_sir_model(), static_sir_model(),
        mseir_model(), sir_subpops_model()), parametric models
        (polynomial_model(), fp_model()), nonparametric models
        (lp_model()), semiparametric models
        (penalized_splines_model()), hierarchical models
        (hierarchical_bayesian_model()). The package is based on the
        book "Modeling Infectious Disease Parameters Based on
        Serological and Social Contact Data: A Modern Statistical
        Perspective" (Hens, Niel & Shkedy, Ziv & Aerts, Marc & Faes,
        Christel & Damme, Pierre & Beutels, Philippe., 2013)
        <doi:10.1007/978-1-4614-4072-7>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0)
RoxygenNote: 7.3.3
Imports: deSolve, dplyr, tidyr, janitor, ggplot2, locfit, purrr,
        stringr, magrittr, methods, mgcv, mixdist, scam, mvtnorm,
        patchwork, assertthat, Rcpp (>= 0.12.0), RcppParallel (>=
        5.0.1), rstan (>= 2.18.1), rstantools (>= 2.4.0), boot, pROC,
        stats4
Suggests: covr, knitr, rmarkdown, bookdown, testthat (>= 3.0.0)
Collate: 'data.R' 'fractional_polynomial_models.R'
        'polynomial_models.R' 'utils.R' 'compare_models.R'
        'correct_prevalence.R' 'weibull_model.R' 'farrington_model.R'
        'nonparametric.R' 'semiparametric_models.R' 'mixture_model.R'
        'hierarchical_bayesian_model.R' 'to_titer.R' 'serosv.R'
        'stanmodels.R' 'plots.R' 'compute_ci.R' 'age_time_model.R'
        'predict.R' 'print.R'
Config/testthat/edition: 3
URL: https://oucru-modelling.github.io/serosv/,
        https://github.com/OUCRU-Modelling/serosv
VignetteBuilder: knitr
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make
BugReports: https://github.com/OUCRU-Modelling/serosv/issues
Repository: https://oucru-modelling.r-universe.dev
Date/Publication: 2026-04-02 07:33:10 UTC
RemoteUrl: https://github.com/oucru-modelling/serosv
RemoteRef: HEAD
RemoteSha: ae7864fa0c420f3e28e1c72c1cc19047bd251119
NeedsCompilation: yes
Packaged: 2026-07-04 20:39:39 UTC; root
Author: Anh Phan Truong Quynh [aut, cre] (ORCID:
    <https://orcid.org/0009-0000-2129-435X>),
  Nguyen Pham Nguyen The [aut] (ORCID:
    <https://orcid.org/0000-0002-0356-2776>),
  Long Bui Thanh [aut],
  Tuyen Huynh [aut],
  Thinh Ong [aut] (ORCID: <https://orcid.org/0000-0001-6772-9291>),
  Marc Choisy [aut] (ORCID: <https://orcid.org/0000-0002-5187-6390>)
Maintainer: Anh Phan Truong Quynh <anhptq@oucru.org>