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Model selection4 months ago
Generate models comparison data.frame | Generate custom metrics
Convert assay readings to titer4 months ago
Overview | Convert to titer workflow | Config | 4PL function: OD = D + (A - D) / (1 + 10^((log10(conc) - c) * b)) | Assign each sample a "true" concentration (UI/ml) | ~60% positive (conc > 0.1), ~40% negative | Negative control concentrations per plate (one fixed OD per plate per dilution) | Antitoxin | Generate one row per sample × dilution, compute OD via 4PL + noise | Custom models
Data transformation4 months ago
Aggregate data
Imperfect serological test4 months ago
Imperfect test | Fitting corrected data
Input data4 months ago
Input data format | Data transformation
Model repeated cross-sectional data4 months ago
Age-time varying model
Model visualization4 months ago
Visualize model | Customize the plot | Built-in function | ggplot2 functions
Modeling directly from antibody levels4 months ago
Mixture model
Nonparametric model4 months ago
Local estimation by polynomial
Parametric models4 months ago
Frequentist methods | Polynomial models | Fractional polynomial model | Nonlinear models | Farrington model | Weibull model | Bayesian methods | Farrington | Log-logistic
Semiparametric model4 months ago
Penalized splines | Penalized likelihood framework | Generalized Linear Mixed Model framework